PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16619_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 272aa    MW: 30808.1 Da    PI: 8.1114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16619_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.2e-0879124554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +  rE+ RRd++N+ f eL   l ++     +K +Ka+iL  +++ +k+L
  RrC16619_p1  79 KADREKIRRDKLNEQFLELGNALDPN----RPKSDKASILIDTIQTLKNL 124
                  5679*******************997....79************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.02E-571128No hitNo description
PROSITE profilePS5088811.73174124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1377144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-579124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-680130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1282146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVARGEHKLL ICLVDVHHPL SPRFRKRVYY FAMEQTKKLK TSSELSLSDE SSASSSSSIR  60
PEKMVEMKKE SVSCRNIHKA DREKIRRDKL NEQFLELGNA LDPNRPKSDK ASILIDTIQT  120
LKNLMTQVDR LKAEHVTLSQ ESRELVQEKS ELREEKTSLK SDIEILNAQY QHRVRSMVPW  180
IPHYTYPVPL VAITQGPVSA LPFPLHGTQN PAPSPNSCST FMPYSAPLSP KTEQKDDVGL  240
ELELNIHASS SAQQVSDFFN SITIDQRDLS VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596284.11e-122PREDICTED: transcription factor bHLH11
RefseqXP_013596285.11e-122PREDICTED: transcription factor bHLH11
SwissprotQ8W2F23e-79BH011_ARATH; Transcription factor bHLH11
TrEMBLA0A078C8T71e-122A0A078C8T7_BRANA; BnaC07g45960D protein
TrEMBLA0A0D3DHX81e-122A0A0D3DHX8_BRAOL; Uncharacterized protein
STRINGBra017745.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.29e-81bHLH family protein